SNP Detail For rs2671692
1.Mapping Information
Human SNP ID rs2671692
Human chromosome chr10
Human SNP position 48889774
Pig chromosome chr14
Pig SNP position 97348375
2.Annotation Information
PubMed ID24390342
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/24390342
StudyGenetics of rheumatoid arthritis contributes to biology and drug discovery.
Disease/TraitRheumatoid arthritis
Initial sampleup to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls
Replication sampleup to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls
Region10q11.23
Chromosome idchr10
Chromosome position48889774
Reported geneWDFY4
Mapped geneWDFY4, LRRC18
Upstream gene id
Downstream gene id
SNP gene ids57705, 474354
Upstream gene distance
Downstream gene distance
SNP risk allelers2671692-A
SNPsrs2671692
Merged0
SNP id current2671692
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.07
%95 Ci[1.05-1.10]
PlatformAffymetrix, Illumina [up to 9739303] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST002318