SNP Detail For rs2660917
1.Mapping Information
Human SNP ID rs2660917
Human chromosome chr18
Human SNP position 70960842
Pig chromosome chr1
Pig SNP position 168346215
2.Annotation Information
PubMed ID19084217
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19084217
StudyVariants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.
Disease/TraitIron status biomarkers
Initial sample459 European ancestry twin pairs
Replication sampleNA
Region18q22.2
Chromosome idchr18
Chromosome position70960842
Reported geneintergenic
Mapped geneLOC105372185 - LOC105372188
Upstream gene id105372185
Downstream gene id105372188
SNP gene ids
Upstream gene distance174089
Downstream gene distance237116
SNP risk allelers2660917-?
SNPsrs2660917
Merged0
SNP id current2660917
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text(serum ferritin)
Or beta
%95 Ci
PlatformIllumina [315887]
CNVN
Mapped traitiron biomarker measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004461
Study accessionGCST000301