SNP Detail For rs2657880
1.Mapping Information
Human SNP ID rs2657880
Human chromosome chr12
Human SNP position 56469986
Pig chromosome chr5
Pig SNP position 23351628
2.Annotation Information
PubMed ID22916037
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22916037
StudyNovel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.
Disease/TraitMetabolite levels
Initial sample6,608 European ancestry individuals
Replication sampleNA
Region12q13.3
Chromosome idchr12
Chromosome position56469986
Reported geneGLS2, SPRYD4
Mapped geneSPRYD4
Upstream gene id
Downstream gene id
SNP gene ids283377
Upstream gene distance
Downstream gene distance
SNP risk allelers2657880-?
SNPsrs2657880
Merged0
SNP id current2657880
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.14
P value7E-30
Pvalue mlog29.1549019599857
P value text
Or beta
%95 Ci
PlatformIllumina [~ 2000000] (imputed)
CNVN
Mapped traitcoronary artery calcification
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004723
Study accessionGCST001639