Human SNP ID | rs2652834 |
---|---|
Human chromosome | chr15 |
Human SNP position | 63104668 |
Pig chromosome | chr1 |
Pig SNP position | 120175103 |
PubMed ID | 20686565 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20686565 |
Study | Biological, clinical and population relevance of 95 loci for blood lipids. |
Disease/Trait | HDL cholesterol |
Initial sample | 99,900 European ancestry individuals |
Replication sample | NA |
Region | 15q22.2 |
Chromosome id | chr15 |
Chromosome position | 63104668 |
Reported gene | LACTB |
Mapped gene | TPM1 - LACTB |
Upstream gene id | 7168 |
Downstream gene id | 114294 |
SNP gene ids | |
Upstream gene distance | 32753 |
Downstream gene distance | 17132 |
SNP risk allele | rs2652834-A |
SNPs | rs2652834 |
Merged | 0 |
SNP id current | 2652834 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.2 |
P value | 0.000000009 |
Pvalue mlog | 8.04575749056067 |
P value text | |
Or beta | 0.39 |
%95 Ci | [0.19-0.59] mg/dL decrease |
Platform | Affymetrix, Illumina, Perlegen [~ 2600000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000755 |
PubMed ID | 24097068 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24097068 |
Study | Discovery and refinement of loci associated with lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | 94,595 European ancestry individuals |
Replication sample | 93,982 European ancestry individuals |
Region | 15q22.2 |
Chromosome id | chr15 |
Chromosome position | 63104668 |
Reported gene | LACTB |
Mapped gene | TPM1 - LACTB |
Upstream gene id | 7168 |
Downstream gene id | 114294 |
SNP gene ids | |
Upstream gene distance | 32753 |
Downstream gene distance | 17132 |
SNP risk allele | rs2652834-A |
SNPs | rs2652834 |
Merged | 0 |
SNP id current | 2652834 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.21 |
P value | 0.00000000004 |
Pvalue mlog | 10.397940008672 |
P value text | |
Or beta | 0.028 |
%95 Ci | [NR] unit decrease |
Platform | NR [NR] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002223 |