SNP Detail For rs2652834
1.Mapping Information
Human SNP ID rs2652834
Human chromosome chr15
Human SNP position 63104668
Pig chromosome chr1
Pig SNP position 120175103
2.Annotation Information
PubMed ID20686565
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20686565
StudyBiological, clinical and population relevance of 95 loci for blood lipids.
Disease/TraitHDL cholesterol
Initial sample99,900 European ancestry individuals
Replication sampleNA
Region15q22.2
Chromosome idchr15
Chromosome position63104668
Reported geneLACTB
Mapped geneTPM1 - LACTB
Upstream gene id7168
Downstream gene id114294
SNP gene ids
Upstream gene distance32753
Downstream gene distance17132
SNP risk allelers2652834-A
SNPsrs2652834
Merged0
SNP id current2652834
Contextintron_variant
Intergenic1
Allele frequency0.2
P value0.000000009
Pvalue mlog8.04575749056067
P value text
Or beta0.39
%95 Ci[0.19-0.59] mg/dL decrease
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000755
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitHDL cholesterol
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region15q22.2
Chromosome idchr15
Chromosome position63104668
Reported geneLACTB
Mapped geneTPM1 - LACTB
Upstream gene id7168
Downstream gene id114294
SNP gene ids
Upstream gene distance32753
Downstream gene distance17132
SNP risk allelers2652834-A
SNPsrs2652834
Merged0
SNP id current2652834
Contextintron_variant
Intergenic1
Allele frequency0.21
P value0.00000000004
Pvalue mlog10.397940008672
P value text
Or beta0.028
%95 Ci[NR] unit decrease
PlatformNR [NR] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002223