Human SNP ID | rs2648708 |
---|---|
Human chromosome | chr10 |
Human SNP position | 12559440 |
Pig chromosome | chr10 |
Pig SNP position | 65040883 |
PubMed ID | 25886283 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25886283 |
Study | Genome-wide association study of serum minerals levels in children of different ethnic background. |
Disease/Trait | Calcium levels |
Initial sample | 5,261 European ancestry children, 3,817 African-American ancestry children |
Replication sample | |
Region | 10p13 |
Chromosome id | chr10 |
Chromosome position | 12559440 |
Reported gene | NR |
Mapped gene | CAMK1D |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57118 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2648708-T |
SNPs | rs2648708 |
Merged | 0 |
SNP id current | 2648708 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (EA) |
Or beta | 0.0696 |
%95 Ci | [-0.10002--0.03918] mg/dl decrease |
Platform | Illumina [up to 507950] |
CNV | N |
Mapped trait | calcium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004838 |
Study accession | GCST002857 |