SNP Detail For rs2643217
1.Mapping Information
Human SNP ID rs2643217
Human chromosome chr15
Human SNP position 38711562
Pig chromosome chr1
Pig SNP position 147971885
2.Annotation Information
PubMed ID20889312
JournalSchizophr Res
Linkwww.ncbi.nlm.nih.gov/pubmed/20889312
StudyA genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.
Disease/TraitBipolar disorder and schizophrenia
Initial sample651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls
Replication sampleNA
Region15q14
Chromosome idchr15
Chromosome position38711562
Reported geneNR
Mapped geneC15orf53 - LOC105370776
Upstream gene id400359
Downstream gene id105370776
SNP gene ids
Upstream gene distance11524
Downstream gene distance18181
SNP risk allelers2643217-?
SNPsrs2643217
Merged0
SNP id current2643217
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.2713
%95 Ci[NR]
PlatformAffymetrix [722112]
CNVN
Mapped traitmental or behavioural disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000677
Study accessionGCST000821