Human SNP ID | rs2634074 |
---|---|
Human chromosome | chr4 |
Human SNP position | 110755885 |
Pig chromosome | chr8 |
Pig SNP position | 119772947 |
PubMed ID | 26708676 |
---|---|
Journal | Lancet Neurol |
Link | www.ncbi.nlm.nih.gov/pubmed/26708676 |
Study | Loci associated with ischaemic stroke and its subtypes (SiGN): a genome-wide association study. |
Disease/Trait | Ischemic stroke |
Initial sample | 14,300 European ancestry cases, 1,609 African ancestry cases, 942 Hispanic cases, 26,690 European ancestry controls, 3,354 African ancestry controls, 2,429 Hispanic controls |
Replication sample | 996 African ancestry cases, 219 East Asian ancestry cases, 17,334 European ancestry cases, 548 Hispanic cases, 2,385 South Asian ancestry cases, 5,811 African ancestry controls, 329 East Asian ancestry controls, 350,928 European ancestry controls, 686 His |
Region | 4q25 |
Chromosome id | chr4 |
Chromosome position | 110755885 |
Reported gene | PITX2 |
Mapped gene | PITX2 - MIR297 |
Upstream gene id | 5308 |
Downstream gene id | 100126354 |
SNP gene ids | |
Upstream gene distance | 113762 |
Downstream gene distance | 104697 |
SNP risk allele | rs2634074-T |
SNPs | rs2634074 |
Merged | 0 |
SNP id current | 2634074 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.021 |
P value | 0.00000000000003 |
Pvalue mlog | 13.5228787452803 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.07-1.12] |
Platform | Illumina [up to 15400000] (imputed) |
CNV | N |
Mapped trait | Ischemic stroke |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0002140 |
Study accession | GCST003258 |