SNP Detail For rs263156
1.Mapping Information
Human SNP ID rs263156
Human chromosome chr6
Human SNP position 142586378
Pig chromosome chr1
Pig SNP position 25135561
2.Annotation Information
PubMed ID26105758
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26105758
StudyA genome-wide association study identifies multiple loci for variation in human ear morphology.
Disease/TraitLobe size
Initial sample4,919 Latin American individuals
Replication sampleNA
Region6q24.2
Chromosome idchr6
Chromosome position142586378
Reported geneGPR126, LOC153910
Mapped geneLOC153910
Upstream gene id
Downstream gene id
SNP gene ids153910
Upstream gene distance
Downstream gene distance
SNP risk allelers263156-C
SNPsrs263156
Merged
SNP id current263156
Contextintron_variant
Intergenic0
Allele frequency0.67
P value0.0000000000003
Pvalue mlog12.5228787452803
P value text
Or beta0.109
%95 Ciunit increase
PlatformIllumina [671038]
CNVN
Mapped traitlobe size
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007666
Study accessionGCST002999
PubMed ID26105758
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26105758
StudyA genome-wide association study identifies multiple loci for variation in human ear morphology.
Disease/TraitLobe attachment
Initial sample4,919 Latin American individuals
Replication sampleNA
Region6q24.2
Chromosome idchr6
Chromosome position142586378
Reported geneLOC153910, GPR126
Mapped geneLOC153910
Upstream gene id
Downstream gene id
SNP gene ids153910
Upstream gene distance
Downstream gene distance
SNP risk allelers263156-C
SNPsrs263156
Merged
SNP id current263156
Contextintron_variant
Intergenic0
Allele frequency0.67
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [671038]
CNVN
Mapped traitlobe attachment
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007667
Study accessionGCST002998
PubMed ID26105758
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26105758
StudyA genome-wide association study identifies multiple loci for variation in human ear morphology.
Disease/TraitEar morphology
Initial sample4,919 Latin American individuals
Replication sampleNA
Region6q24.2
Chromosome idchr6
Chromosome position142586378
Reported geneLOC153910, GPR126
Mapped geneLOC153910
Upstream gene id
Downstream gene id
SNP gene ids153910
Upstream gene distance
Downstream gene distance
SNP risk allelers263156-C
SNPsrs263156
Merged
SNP id current263156
Contextintron_variant
Intergenic0
Allele frequency0.67
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta
%95 Ci
PlatformIllumina [671038]
CNVN
Mapped traitouter ear morphology trait
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007664
Study accessionGCST003001