SNP Detail For rs2630788
1.Mapping Information
Human SNP ID rs2630788
Human chromosome chr3
Human SNP position 21833634
Pig chromosome chr13
Pig SNP position 9952595
2.Annotation Information
PubMed ID26528553
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26528553
StudyGenome-Wide Association Studies of the Human Gut Microbiota.
Disease/TraitGut microbiome composition (summer and winter)
Initial sample127 Hutterite individuals
Replication sampleNA
Region3p24.3
Chromosome idchr3
Chromosome position21833634
Reported geneNR
Mapped geneZNF385D
Upstream gene id
Downstream gene id
SNP gene ids79750
Upstream gene distance
Downstream gene distance
SNP risk allelers2630788-?
SNPsrs2630788
Merged0
SNP id current2630788
Contextintron_variant
Intergenic0
Allele frequency
P value0.00000004
Pvalue mlog7.39794000867203
P value text(genus_Anaerostipes)
Or beta0.9837498
%95 Ci[0.65-1.32] unit increase
PlatformAffymetrix [212153]
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003222
PubMed ID26528553
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26528553
StudyGenome-Wide Association Studies of the Human Gut Microbiota.
Disease/TraitGut microbiome composition (summer)
Initial sample91 Hutterite individuals
Replication sampleNA
Region3p24.3
Chromosome idchr3
Chromosome position21833634
Reported geneNR
Mapped geneZNF385D
Upstream gene id
Downstream gene id
SNP gene ids79750
Upstream gene distance
Downstream gene distance
SNP risk allelers2630788-?
SNPsrs2630788
Merged0
SNP id current2630788
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000008
Pvalue mlog6.09691001300805
P value text(genus_Anaerostipes)
Or beta1.019148
%95 Ci[0.64-1.4] unit increase
PlatformAffymetrix [210924]
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003221