Human SNP ID | rs2629751 |
---|---|
Human chromosome | chr12 |
Human SNP position | 104028030 |
Pig chromosome | chr5 |
Pig SNP position | 84006070 |
PubMed ID | 22841784 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/22841784 |
Study | Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection. |
Disease/Trait | Hepatitis C induced liver fibrosis |
Initial sample | 1,161 European ancestry HCV-infected individuals |
Replication sample | 1,181 European ancestry HCV-infected individuals |
Region | 12q23.3 |
Chromosome id | chr12 |
Chromosome position | 104028030 |
Reported gene | GLT8D2 |
Mapped gene | GLT8D2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 83468 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2629751-G |
SNPs | rs2629751 |
Merged | 0 |
SNP id current | 2629751 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.31 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (Binary F0/F4) |
Or beta | |
%95 Ci | |
Platform | Illumina [780650] (imputed) |
CNV | N |
Mapped trait | hepatitis C infection, cirrhosis of liver |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003047, http://www.ebi.ac.uk/efo/EFO_0001422 |
Study accession | GCST001623 |