SNP Detail For rs2629751
1.Mapping Information
Human SNP ID rs2629751
Human chromosome chr12
Human SNP position 104028030
Pig chromosome chr5
Pig SNP position 84006070
2.Annotation Information
PubMed ID22841784
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/22841784
StudyGenome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.
Disease/TraitHepatitis C induced liver fibrosis
Initial sample1,161 European ancestry HCV-infected individuals
Replication sample1,181 European ancestry HCV-infected individuals
Region12q23.3
Chromosome idchr12
Chromosome position104028030
Reported geneGLT8D2
Mapped geneGLT8D2
Upstream gene id
Downstream gene id
SNP gene ids83468
Upstream gene distance
Downstream gene distance
SNP risk allelers2629751-G
SNPsrs2629751
Merged0
SNP id current2629751
Contextintron_variant
Intergenic0
Allele frequency0.31
P value0.0000001
Pvalue mlog7
P value text(Binary F0/F4)
Or beta
%95 Ci
PlatformIllumina [780650] (imputed)
CNVN
Mapped traithepatitis C infection, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003047, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST001623