PigVar
Overview
Pig SNPs
SNP Table
SNP Hit on Gene
SNP Coding
SNP lincRNA
Search SNPs by Region
Browse on Chromosome
SV
Positive Selection
Help
Manual
Pipeline
Data Statistics
Contact Us
Download
SNP Detail For rs2629540
1.Mapping Information
| Human SNP ID | rs2629540 |
|---|---|
| Human chromosome | chr10 |
| Human SNP position | 124737579 |
| Pig chromosome | chr14 |
| Pig SNP position | 145612858 |
2.Annotation Information
| PubMed ID | 23958962 |
|---|---|
| Journal | Mol Psychiatry |
| Link | www.ncbi.nlm.nih.gov/pubmed/23958962 |
| Study | Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene. |
| Disease/Trait | Cocaine dependence |
| Initial sample | 1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls |
| Replication sample | 4,498 European ancestry individuals, 2,114 African American individuals |
| Region | 10q26.13 |
| Chromosome id | chr10 |
| Chromosome position | 124737579 |
| Reported gene | FAM53B |
| Mapped gene | FAM53B |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 9679 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs2629540-? |
| SNPs | rs2629540 |
| Merged | 0 |
| SNP id current | 2629540 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | NR |
| P value | 0.00000004 |
| Pvalue mlog | 7.39794000867203 |
| P value text | (Symptom count) |
| Or beta | |
| %95 Ci | |
| Platform | Illumina [37426733] (imputed) |
| CNV | N |
| Mapped trait | cocaine dependence |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002610 |
| Study accession | GCST002142 |
| PubMed ID | 23958962 |
| Journal | Mol Psychiatry |
| Link | www.ncbi.nlm.nih.gov/pubmed/23958962 |
| Study | Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene. |
| Disease/Trait | Cocaine dependence |
| Initial sample | 1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls |
| Replication sample | 4,498 European ancestry individuals, 2,114 African American individuals |
| Region | 10q26.13 |
| Chromosome id | chr10 |
| Chromosome position | 124737579 |
| Reported gene | FAM53B |
| Mapped gene | FAM53B |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 9679 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs2629540-? |
| SNPs | rs2629540 |
| Merged | 0 |
| SNP id current | 2629540 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | NR |
| P value | 0.000001 |
| Pvalue mlog | 6 |
| P value text | (Symptom count, AA) |
| Or beta | |
| %95 Ci | |
| Platform | Illumina [37426733] (imputed) |
| CNV | N |
| Mapped trait | cocaine dependence |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002610 |
| Study accession | GCST002142 |
|
Kunming Institute of Zoology, CAS
and Xi'an University of Technology ©2014-2017 All Rights Reserved.
|
|