SNP Detail For rs2623384
1.Mapping Information
Human SNP ID rs2623384
Human chromosome chr3
Human SNP position 99345376
Pig chromosome chr13
Pig SNP position 169819998
2.Annotation Information
PubMed ID25335168
JournalTransl Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25335168
StudyCommon variants at 1p36 are associated with superior frontal gyrus volume.
Disease/TraitSuperior frontal gyrus grey matter volume
Initial sample158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls
Replication sampleNA
Region3q12.1
Chromosome idchr3
Chromosome position99345376
Reported geneCOL8A1
Mapped geneLOC105374004 - LOC105374005
Upstream gene id105374004
Downstream gene id105374005
SNP gene ids
Upstream gene distance7721
Downstream gene distance156382
SNP risk allelers2623384-G
SNPsrs2623384
Merged0
SNP id current2623384
Contextintergenic_variant
Intergenic1
Allele frequency0.39
P value0.000009
Pvalue mlog5.04575749056067
P value text(Left superior frontal gyrus)
Or beta724
%95 Ci[NR] unit decrease
PlatformAffymetrix [517946]
CNVN
Mapped traitsuperior frontal gyrus grey matter volume measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006516
Study accessionGCST002663