Human SNP ID | rs2623384 |
---|---|
Human chromosome | chr3 |
Human SNP position | 99345376 |
Pig chromosome | chr13 |
Pig SNP position | 169819998 |
PubMed ID | 25335168 |
---|---|
Journal | Transl Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25335168 |
Study | Common variants at 1p36 are associated with superior frontal gyrus volume. |
Disease/Trait | Superior frontal gyrus grey matter volume |
Initial sample | 158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls |
Replication sample | NA |
Region | 3q12.1 |
Chromosome id | chr3 |
Chromosome position | 99345376 |
Reported gene | COL8A1 |
Mapped gene | LOC105374004 - LOC105374005 |
Upstream gene id | 105374004 |
Downstream gene id | 105374005 |
SNP gene ids | |
Upstream gene distance | 7721 |
Downstream gene distance | 156382 |
SNP risk allele | rs2623384-G |
SNPs | rs2623384 |
Merged | 0 |
SNP id current | 2623384 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.39 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Left superior frontal gyrus) |
Or beta | 724 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix [517946] |
CNV | N |
Mapped trait | superior frontal gyrus grey matter volume measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006516 |
Study accession | GCST002663 |