SNP Detail For rs261967
1.Mapping Information
Human SNP ID rs261967
Human chromosome chr5
Human SNP position 96514546
Pig chromosome chr2
Pig SNP position 106850376
2.Annotation Information
PubMed ID22344219
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22344219
StudyMeta-analysis identifies common variants associated with body mass index in east Asians.
Disease/TraitBody mass index
Initial sample22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals
Replication sample53,215 East Asian ancestry results, 2,118 Malay ancestry individuals
Region5q15
Chromosome idchr5
Chromosome position96514546
Reported genePCSK1
Mapped geneLOC101929710
Upstream gene id
Downstream gene id
SNP gene ids101929710
Upstream gene distance
Downstream gene distance
SNP risk allelers261967-C
SNPsrs261967
Merged0
SNP id current261967
Contextintron_variant
Intergenic0
Allele frequency0.41
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta3.77
%95 Ci[2.26-5.28] % increase
PlatformAffymetrix, Illumina [2474474] (imputed)
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001415
PubMed ID24861553
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24861553
StudyMeta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.
Disease/TraitBody mass index
Initial sample82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals
Replication sampleUp to 47,352 East Asian ancestry individuals
Region5q15
Chromosome idchr5
Chromosome position96514546
Reported genePCSK1
Mapped geneLOC101929710
Upstream gene id
Downstream gene id
SNP gene ids101929710
Upstream gene distance
Downstream gene distance
SNP risk allelers261967-C
SNPsrs261967
Merged0
SNP id current261967
Contextintron_variant
Intergenic0
Allele frequency0.41
P value0.0000000000008
Pvalue mlog12.096910013008
P value text
Or beta0.0376
%95 Ci[0.027-0.048] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002461