SNP Detail For rs2619566
1.Mapping Information
Human SNP ID rs2619566
Human chromosome chr3
Human SNP position 2583254
Pig chromosome chr13
Pig SNP position 65385893
2.Annotation Information
PubMed ID19451621
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/19451621
StudyReduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.
Disease/TraitAmyotrophic lateral sclerosis
Initial sample1,821 cases, 2,258 controls
Replication sample538 cases, 556 controls
Region3p26.3
Chromosome idchr3
Chromosome position2583254
Reported geneCNTN4
Mapped geneCNTN4
Upstream gene id
Downstream gene id
SNP gene ids152330
Upstream gene distance
Downstream gene distance
SNP risk allelers2619566-G
SNPsrs2619566
Merged0
SNP id current2619566
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text(age of onset)
Or beta3.03
%95 Ci[1.71-4.35] years decrease
PlatformIllumina [288357]
CNVN
Mapped traitamyotrophic lateral sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000253
Study accessionGCST000406