Human SNP ID | rs2618516 |
---|---|
Human chromosome | chr11 |
Human SNP position | 14000092 |
Pig chromosome | chr2 |
Pig SNP position | 48513998 |
PubMed ID | 23471985 |
---|---|
Journal | Proc Natl Acad Sci U S A |
Link | www.ncbi.nlm.nih.gov/pubmed/23471985 |
Study | Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity. |
Disease/Trait | Brain connectivity |
Initial sample | 331 European ancestry individuals |
Replication sample | |
Region | 11p15.2 |
Chromosome id | chr11 |
Chromosome position | 14000092 |
Reported gene | SPON1 |
Mapped gene | SPON1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10418 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2618516-T |
SNPs | rs2618516 |
Merged | 0 |
SNP id current | 2618516 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.36 |
P value | 0.0000000006 |
Pvalue mlog | 9.22184874961635 |
P value text | (connectivity pattern) |
Or beta | 0.0018 |
%95 Ci | [NR] unit increase |
Platform | Illumina [428287] |
CNV | N |
Mapped trait | brain connectivity measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005210 |
Study accession | GCST001889 |