Human SNP ID | rs2616978 |
---|---|
Human chromosome | chr8 |
Human SNP position | 4620822 |
Pig chromosome | chr15 |
Pig SNP position | 40981060 |
PubMed ID | 25456346 |
---|---|
Journal | Psychoneuroendocrinology |
Link | www.ncbi.nlm.nih.gov/pubmed/25456346 |
Study | Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene. |
Disease/Trait | Post-traumatic stress disorder |
Initial sample | 940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls |
Replication sample | 313 European ancestry cases, 178 European ancestry trauma-exposed controls |
Region | 8p23.2 |
Chromosome id | chr8 |
Chromosome position | 4620822 |
Reported gene | CSMD1 |
Mapped gene | CSMD1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64478 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2616978-T |
SNPs | rs2616978 |
Merged | 0 |
SNP id current | 2616978 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.607 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Hispanic) |
Or beta | 2.004 |
%95 Ci | [1.71-2.29] |
Platform | Illumina [21693469] (imputed) |
CNV | N |
Mapped trait | post-traumatic stress disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001358 |
Study accession | GCST002681 |