SNP Detail For rs2616978
1.Mapping Information
Human SNP ID rs2616978
Human chromosome chr8
Human SNP position 4620822
Pig chromosome chr15
Pig SNP position 40981060
2.Annotation Information
PubMed ID25456346
JournalPsychoneuroendocrinology
Linkwww.ncbi.nlm.nih.gov/pubmed/25456346
StudyGenomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene.
Disease/TraitPost-traumatic stress disorder
Initial sample940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls
Replication sample313 European ancestry cases, 178 European ancestry trauma-exposed controls
Region8p23.2
Chromosome idchr8
Chromosome position4620822
Reported geneCSMD1
Mapped geneCSMD1
Upstream gene id
Downstream gene id
SNP gene ids64478
Upstream gene distance
Downstream gene distance
SNP risk allelers2616978-T
SNPsrs2616978
Merged0
SNP id current2616978
Contextintron_variant
Intergenic0
Allele frequency0.607
P value0.000003
Pvalue mlog5.52287874528033
P value text(Hispanic)
Or beta2.004
%95 Ci[1.71-2.29]
PlatformIllumina [21693469] (imputed)
CNVN
Mapped traitpost-traumatic stress disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001358
Study accessionGCST002681