Human SNP ID | rs2614463 |
---|---|
Human chromosome | chr14 |
Human SNP position | 99279937 |
Pig chromosome | chr7 |
Pig SNP position | 127863868 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 14q32.2 |
Chromosome id | chr14 |
Chromosome position | 99279937 |
Reported gene | NR |
Mapped gene | BCL11B - LOC105370660 |
Upstream gene id | 64919 |
Downstream gene id | 105370660 |
SNP gene ids | |
Upstream gene distance | 8224 |
Downstream gene distance | 5237 |
SNP risk allele | rs2614463-T |
SNPs | rs2614463 |
Merged | 0 |
SNP id current | 2614463 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.396310788487282 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (IGP39) |
Or beta | 0.1731 |
%95 Ci | [0.098-0.249] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |