Human SNP ID | rs261342 |
---|---|
Human chromosome | chr15 |
Human SNP position | 58438954 |
Pig chromosome | chr1 |
Pig SNP position | 125660235 |
PubMed ID | 23281178 |
---|---|
Journal | Hum Mutat |
Link | www.ncbi.nlm.nih.gov/pubmed/23281178 |
Study | A genome-wide assessment of variability in human serum metabolism. |
Disease/Trait | Metabolite levels |
Initial sample | 214 European ancestry prostate cancer cases, 188 European ancestry controls |
Replication sample | 489 European ancestry prostate cancer cases |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 58438954 |
Reported gene | LIPC |
Mapped gene | LIPC, LOC101928694 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3990, 101928694 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs261342-C |
SNPs | rs261342 |
Merged | 0 |
SNP id current | 261342 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000000000009 |
Pvalue mlog | 12.0457574905606 |
P value text | (Glycerophospho-N-Palmitoyl Ethanolamine) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [333722] |
CNV | N |
Mapped trait | metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004725 |
Study accession | GCST001882 |