SNP Detail For rs261342
1.Mapping Information
Human SNP ID rs261342
Human chromosome chr15
Human SNP position 58438954
Pig chromosome chr1
Pig SNP position 125660235
2.Annotation Information
PubMed ID23281178
JournalHum Mutat
Linkwww.ncbi.nlm.nih.gov/pubmed/23281178
StudyA genome-wide assessment of variability in human serum metabolism.
Disease/TraitMetabolite levels
Initial sample214 European ancestry prostate cancer cases, 188 European ancestry controls
Replication sample489 European ancestry prostate cancer cases
Region15q21.3
Chromosome idchr15
Chromosome position58438954
Reported geneLIPC
Mapped geneLIPC, LOC101928694
Upstream gene id
Downstream gene id
SNP gene ids3990, 101928694
Upstream gene distance
Downstream gene distance
SNP risk allelers261342-C
SNPsrs261342
Merged0
SNP id current261342
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000000000009
Pvalue mlog12.0457574905606
P value text(Glycerophospho-N-Palmitoyl Ethanolamine)
Or beta
%95 Ci
PlatformAffymetrix [333722]
CNVN
Mapped traitmetabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004725
Study accessionGCST001882