SNP Detail For rs2601828
1.Mapping Information
Human SNP ID rs2601828
Human chromosome chr16
Human SNP position 4053870
Pig chromosome chr3
Pig SNP position 39189820
2.Annotation Information
PubMed ID20522523
JournalBrain
Linkwww.ncbi.nlm.nih.gov/pubmed/20522523
StudyCommon genetic variation and susceptibility to partial epilepsies: a genome-wide association study.
Disease/TraitPartial epilepsies
Initial sampleUp to 3,445 European ancestry cases, 6,935 European ancestry controls
Replication sampleNA
Region16p13.3
Chromosome idchr16
Chromosome position4053870
Reported geneADCY9
Mapped geneADCY9
Upstream gene id
Downstream gene id
SNP gene ids115
Upstream gene distance
Downstream gene distance
SNP risk allelers2601828-A
SNPsrs2601828
Merged0
SNP id current2601828
Contextintron_variant
Intergenic0
Allele frequency0.222
P value0.000001
Pvalue mlog6
P value text
Or beta1.12
%95 Ci[1.12-1.31]
PlatformIllumina [528745]
CNVN
Mapped traitpartial epilepsy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004263
Study accessionGCST000691