Human SNP ID | rs2597327 |
---|---|
Human chromosome | chr8 |
Human SNP position | 132424695 |
Pig chromosome | chr4 |
Pig SNP position | 8749604 |
PubMed ID | 26112879 |
---|---|
Journal | J Nutrigenet Nutrigenomics |
Link | www.ncbi.nlm.nih.gov/pubmed/26112879 |
Study | Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study. |
Disease/Trait | LDL peak particle diameter (total fat intake interaction) |
Initial sample | 541 European ancestry individuals |
Replication sample | NA |
Region | 8q24.22 |
Chromosome id | chr8 |
Chromosome position | 132424695 |
Reported gene | KCNQ3 |
Mapped gene | KCNQ3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3786 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2597327-T |
SNPs | rs2597327 |
Merged | |
SNP id current | 2597327 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.8 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.04 |
%95 Ci | [0.02-0.06] unit decrease |
Platform | Illumina [1632371] (imputed) |
CNV | N |
Mapped trait | LDL peak particle diameter measurement, total fat intake measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007677, http://www.ebi.ac.uk/efo/EFO_0007678 |
Study accession | GCST002989 |