SNP Detail For rs2597327
1.Mapping Information
Human SNP ID rs2597327
Human chromosome chr8
Human SNP position 132424695
Pig chromosome chr4
Pig SNP position 8749604
2.Annotation Information
PubMed ID26112879
JournalJ Nutrigenet Nutrigenomics
Linkwww.ncbi.nlm.nih.gov/pubmed/26112879
StudyInteraction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.
Disease/TraitLDL peak particle diameter (total fat intake interaction)
Initial sample541 European ancestry individuals
Replication sampleNA
Region8q24.22
Chromosome idchr8
Chromosome position132424695
Reported geneKCNQ3
Mapped geneKCNQ3
Upstream gene id
Downstream gene id
SNP gene ids3786
Upstream gene distance
Downstream gene distance
SNP risk allelers2597327-T
SNPsrs2597327
Merged
SNP id current2597327
Contextintron_variant
Intergenic0
Allele frequency0.8
P value0.000001
Pvalue mlog6
P value text
Or beta0.04
%95 Ci[0.02-0.06] unit decrease
PlatformIllumina [1632371] (imputed)
CNVN
Mapped traitLDL peak particle diameter measurement, total fat intake measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007677, http://www.ebi.ac.uk/efo/EFO_0007678
Study accessionGCST002989