SNP Detail For rs2597167
1.Mapping Information
Human SNP ID rs2597167
Human chromosome chr17
Human SNP position 47970290
Pig chromosome chr12
Pig SNP position 24043536
2.Annotation Information
PubMed ID23934736
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23934736
StudyGenome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
Disease/TraitMetabolite levels (Pyroglutamine)
Initial sample1,260 African American individuals
Replication sampleNA
Region17q21.32
Chromosome idchr17
Chromosome position47970290
Reported geneCDK5RAP3
Mapped geneCDK5RAP3
Upstream gene id
Downstream gene id
SNP gene ids80279
Upstream gene distance
Downstream gene distance
SNP risk allelers2597167-C
SNPsrs2597167
Merged0
SNP id current2597167
Contextintron_variant
Intergenic0
Allele frequency
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta0.14
%95 Ci[0.08-0.2] unit decrease
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitpyroglutamine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005408
Study accessionGCST002118