Human SNP ID | rs2597167 |
---|---|
Human chromosome | chr17 |
Human SNP position | 47970290 |
Pig chromosome | chr12 |
Pig SNP position | 24043536 |
PubMed ID | 23934736 |
---|---|
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/23934736 |
Study | Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study. |
Disease/Trait | Metabolite levels (Pyroglutamine) |
Initial sample | 1,260 African American individuals |
Replication sample | NA |
Region | 17q21.32 |
Chromosome id | chr17 |
Chromosome position | 47970290 |
Reported gene | CDK5RAP3 |
Mapped gene | CDK5RAP3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80279 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2597167-C |
SNPs | rs2597167 |
Merged | 0 |
SNP id current | 2597167 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 0.14 |
%95 Ci | [0.08-0.2] unit decrease |
Platform | Affymetrix [~ 2500000] (imputed) |
CNV | N |
Mapped trait | pyroglutamine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005408 |
Study accession | GCST002118 |