Human SNP ID | rs2596542 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31398818 |
Pig chromosome | chr7 |
Pig SNP position | 27237498 |
PubMed ID | 21499248 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21499248 |
Study | Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma. |
Disease/Trait | Hepatocellular carcinoma |
Initial sample | 721 Japanese ancestry cases, 2,890 Japanese ancestry controls |
Replication sample | 673 Japanese ancestry cases, 2,596 Japanese ancestry controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31398818 |
Reported gene | MICA |
Mapped gene | LOC101929072 - MICA |
Upstream gene id | 101929072 |
Downstream gene id | 100507436 |
SNP gene ids | |
Upstream gene distance | 333 |
Downstream gene distance | 966 |
SNP risk allele | rs2596542-A |
SNPs | rs2596542 |
Merged | 0 |
SNP id current | 2596542 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.33 |
P value | 0.0000000000004 |
Pvalue mlog | 12.397940008672 |
P value text | |
Or beta | 1.39 |
%95 Ci | [1.27-1.52] |
Platform | Illumina [432703] |
CNV | N |
Mapped trait | hepatocellular carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000182 |
Study accession | GCST001041 |