SNP Detail For rs2596542
1.Mapping Information
Human SNP ID rs2596542
Human chromosome chr6
Human SNP position 31398818
Pig chromosome chr7
Pig SNP position 27237498
2.Annotation Information
PubMed ID21499248
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21499248
StudyGenome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma.
Disease/TraitHepatocellular carcinoma
Initial sample721 Japanese ancestry cases, 2,890 Japanese ancestry controls
Replication sample673 Japanese ancestry cases, 2,596 Japanese ancestry controls
Region6p21.33
Chromosome idchr6
Chromosome position31398818
Reported geneMICA
Mapped geneLOC101929072 - MICA
Upstream gene id101929072
Downstream gene id100507436
SNP gene ids
Upstream gene distance333
Downstream gene distance966
SNP risk allelers2596542-A
SNPsrs2596542
Merged0
SNP id current2596542
Contextupstream_gene_variant
Intergenic1
Allele frequency0.33
P value0.0000000000004
Pvalue mlog12.397940008672
P value text
Or beta1.39
%95 Ci[1.27-1.52]
PlatformIllumina [432703]
CNVN
Mapped traithepatocellular carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000182
Study accessionGCST001041