SNP Detail For rs2593957
1.Mapping Information
Human SNP ID rs2593957
Human chromosome chr3
Human SNP position 108984178
Pig chromosome chr13
Pig SNP position 159588415
2.Annotation Information
PubMed ID24743840
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24743840
StudyGenome-wide diet-gene interaction analyses for risk of colorectal cancer.
Disease/TraitColorectal cancer (diet interaction)
Initial sample9,287 European ancestry cases, 9,117 European ancestry controls
Replication sampleNA
Region3q13.13
Chromosome idchr3
Chromosome position108984178
Reported geneMORC1
Mapped geneMORC1
Upstream gene id
Downstream gene id
SNP gene ids27136
Upstream gene distance
Downstream gene distance
SNP risk allelers2593957-?
SNPsrs2593957
Merged0
SNP id current2593957
Contextintron_variant
Intergenic0
Allele frequency0.40-0.46
P value0.000002
Pvalue mlog5.69897000433601
P value text(Fiber)
Or beta1.15
%95 Ci[1.09-1.2]
PlatformAffymetrix, Illumina [> 2700000] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST002415