Human SNP ID | rs2593957 |
---|---|
Human chromosome | chr3 |
Human SNP position | 108984178 |
Pig chromosome | chr13 |
Pig SNP position | 159588415 |
PubMed ID | 24743840 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24743840 |
Study | Genome-wide diet-gene interaction analyses for risk of colorectal cancer. |
Disease/Trait | Colorectal cancer (diet interaction) |
Initial sample | 9,287 European ancestry cases, 9,117 European ancestry controls |
Replication sample | NA |
Region | 3q13.13 |
Chromosome id | chr3 |
Chromosome position | 108984178 |
Reported gene | MORC1 |
Mapped gene | MORC1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 27136 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2593957-? |
SNPs | rs2593957 |
Merged | 0 |
SNP id current | 2593957 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.40-0.46 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Fiber) |
Or beta | 1.15 |
%95 Ci | [1.09-1.2] |
Platform | Affymetrix, Illumina [> 2700000] (imputed) |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST002415 |