Human SNP ID | rs2592394 |
---|---|
Human chromosome | chr2 |
Human SNP position | 176127051 |
Pig chromosome | chr15 |
Pig SNP position | 91395559 |
PubMed ID | 20700443 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20700443 |
Study | Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels. |
Disease/Trait | Magnesium levels |
Initial sample | 15,366 European ancestry individuals |
Replication sample | 8,463 European ancestry individuals |
Region | 2q31.1 |
Chromosome id | chr2 |
Chromosome position | 176127051 |
Reported gene | HOXD9 |
Mapped gene | LOC100129455 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100129455 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2592394-A |
SNPs | rs2592394 |
Merged | 0 |
SNP id current | 2592394 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.3 |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | |
Or beta | 0 |
%95 Ci | [0.002-0.006] mmol/L decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | magnesium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004845 |
Study accession | GCST000756 |