SNP Detail For rs2592394
1.Mapping Information
Human SNP ID rs2592394
Human chromosome chr2
Human SNP position 176127051
Pig chromosome chr15
Pig SNP position 91395559
2.Annotation Information
PubMed ID20700443
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20700443
StudyGenome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.
Disease/TraitMagnesium levels
Initial sample15,366 European ancestry individuals
Replication sample8,463 European ancestry individuals
Region2q31.1
Chromosome idchr2
Chromosome position176127051
Reported geneHOXD9
Mapped geneLOC100129455
Upstream gene id
Downstream gene id
SNP gene ids100129455
Upstream gene distance
Downstream gene distance
SNP risk allelers2592394-A
SNPsrs2592394
Merged0
SNP id current2592394
Contextintron_variant
Intergenic0
Allele frequency0.3
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta0
%95 Ci[0.002-0.006] mmol/L decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitmagnesium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004845
Study accessionGCST000756