SNP Detail For rs258671
1.Mapping Information
Human SNP ID rs258671
Human chromosome chr7
Human SNP position 82102130
Pig chromosome chr9
Pig SNP position 108378844
2.Annotation Information
PubMed ID23006423
JournalBMC Cancer
Linkwww.ncbi.nlm.nih.gov/pubmed/23006423
StudyGenetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.
Disease/TraitResponse to taxane treatment (docetaxel)
Initial sample96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines
Replication sampleNA
Region7q21.11
Chromosome idchr7
Chromosome position82102130
Reported geneCACNA2D1
Mapped geneCACNA2D1
Upstream gene id
Downstream gene id
SNP gene ids781
Upstream gene distance
Downstream gene distance
SNP risk allelers258671-?
SNPsrs258671
Merged0
SNP id current258671
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 1300000]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST001692