SNP Detail For rs2586502
1.Mapping Information
Human SNP ID rs2586502
Human chromosome chr17
Human SNP position 50211709
Pig chromosome chr12
Pig SNP position 26430837
2.Annotation Information
PubMed ID23006423
JournalBMC Cancer
Linkwww.ncbi.nlm.nih.gov/pubmed/23006423
StudyGenetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.
Disease/TraitResponse to taxane treatment (docetaxel)
Initial sample96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines
Replication sampleNA
Region17q21.33
Chromosome idchr17
Chromosome position50211709
Reported geneCOL1A1
Mapped geneLOC105371821
Upstream gene id
Downstream gene id
SNP gene ids105371821
Upstream gene distance
Downstream gene distance
SNP risk allelers2586502-?
SNPsrs2586502
Merged0
SNP id current2586502
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 1300000]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST001692