SNP Detail For rs2585417
1.Mapping Information
Human SNP ID rs2585417
Human chromosome chr20
Human SNP position 54227260
Pig chromosome chr17
Pig SNP position 61957603
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region20q13.2
Chromosome idchr20
Chromosome position54227260
Reported genePFDN4
Mapped genePFDN4 - DOK5
Upstream gene id5203
Downstream gene id55816
SNP gene ids
Upstream gene distance7307
Downstream gene distance248212
SNP risk allelers2585417-A
SNPsrs2585417
Merged0
SNP id current2585417
Contextintron_variant
Intergenic1
Allele frequency0.337
P value0.000005
Pvalue mlog5.30102999566398
P value text(Vigorous activity )
Or beta0.03
%95 Ci[NR] min/d increase
PlatformIllumina [899892]
CNVN
Mapped traitphysical activity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003940
Study accessionGCST001762