Human SNP ID | rs2585417 |
---|---|
Human chromosome | chr20 |
Human SNP position | 54227260 |
Pig chromosome | chr17 |
Pig SNP position | 61957603 |
PubMed ID | 23251661 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
Disease/Trait | Obesity-related traits |
Initial sample | 815 Hispanic children from 263 families |
Replication sample | NA |
Region | 20q13.2 |
Chromosome id | chr20 |
Chromosome position | 54227260 |
Reported gene | PFDN4 |
Mapped gene | PFDN4 - DOK5 |
Upstream gene id | 5203 |
Downstream gene id | 55816 |
SNP gene ids | |
Upstream gene distance | 7307 |
Downstream gene distance | 248212 |
SNP risk allele | rs2585417-A |
SNPs | rs2585417 |
Merged | 0 |
SNP id current | 2585417 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.337 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (Vigorous activity ) |
Or beta | 0.03 |
%95 Ci | [NR] min/d increase |
Platform | Illumina [899892] |
CNV | N |
Mapped trait | physical activity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003940 |
Study accession | GCST001762 |