SNP Detail For rs2580816
1.Mapping Information
Human SNP ID rs2580816
Human chromosome chr2
Human SNP position 231933256
Pig chromosome chr15
Pig SNP position 146357632
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region2q37.1
Chromosome idchr2
Chromosome position231933256
Reported geneNPPC
Mapped geneNPPC - DIS3L2
Upstream gene id4880
Downstream gene id129563
SNP gene ids
Upstream gene distance6867
Downstream gene distance28327
SNP risk allelers2580816-T
SNPsrs2580816
Merged0
SNP id current2580816
Contextintergenic_variant
Intergenic1
Allele frequency0.19
P value6E-22
Pvalue mlog21.2218487496163
P value text
Or beta0.045
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817