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SNP Detail For rs2579103
1.Mapping Information
| Human SNP ID | rs2579103 |
|---|---|
| Human chromosome | chr12 |
| Human SNP position | 90239730 |
| Pig chromosome | chr5 |
| Pig SNP position | 97106204 |
2.Annotation Information
| PubMed ID | 25673413 |
|---|---|
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 12q21.33 |
| Chromosome id | chr12 |
| Chromosome position | 90239730 |
| Reported gene | LOC338758 |
| Mapped gene | LOC105369890 - LOC105369892 |
| Upstream gene id | 105369890 |
| Downstream gene id | 105369892 |
| SNP gene ids | |
| Upstream gene distance | 127452 |
| Downstream gene distance | 14095 |
| SNP risk allele | rs2579103-C |
| SNPs | rs2579103 |
| Merged | 0 |
| SNP id current | 2579103 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.259 |
| P value | 0.000005 |
| Pvalue mlog | 5.30102999566398 |
| P value text | (EA, women) |
| Or beta | 0.024 |
| %95 Ci | [0.014-0.035] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 12q21.33 |
| Chromosome id | chr12 |
| Chromosome position | 90239730 |
| Reported gene | LOC338758 |
| Mapped gene | LOC105369890 - LOC105369892 |
| Upstream gene id | 105369890 |
| Downstream gene id | 105369892 |
| SNP gene ids | |
| Upstream gene distance | 127452 |
| Downstream gene distance | 14095 |
| SNP risk allele | rs2579103-C |
| SNPs | rs2579103 |
| Merged | 0 |
| SNP id current | 2579103 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.26 |
| P value | 0.0000004 |
| Pvalue mlog | 6.39794000867203 |
| P value text | (EA) |
| Or beta | 0.021 |
| %95 Ci | [0.013-0.029] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
| PubMed ID | 25673413 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
| Study | Genetic studies of body mass index yield new insights for obesity biology. |
| Disease/Trait | Body mass index |
| Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
| Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
| Region | 12q21.33 |
| Chromosome id | chr12 |
| Chromosome position | 90239730 |
| Reported gene | LOC338758 |
| Mapped gene | LOC105369890 - LOC105369892 |
| Upstream gene id | 105369890 |
| Downstream gene id | 105369892 |
| SNP gene ids | |
| Upstream gene distance | 127452 |
| Downstream gene distance | 14095 |
| SNP risk allele | rs2579103-C |
| SNPs | rs2579103 |
| Merged | 0 |
| SNP id current | 2579103 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.26 |
| P value | 0.0000003 |
| Pvalue mlog | 6.52287874528033 |
| P value text | |
| Or beta | 0.021 |
| %95 Ci | [0.013-0.029] kg/m2 increase |
| Platform | Affymetrix, Illumina [2550021] |
| CNV | N |
| Mapped trait | body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002783 |
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