SNP Detail For rs2573905
1.Mapping Information
Human SNP ID rs2573905
Human chromosome chrX
Human SNP position 92147221
Pig chromosome chrX
Pig SNP position 94200934
2.Annotation Information
PubMed ID19136949
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19136949
StudyGenetic variation in PCDH11X is associated with susceptibility to late-onset Alzheimer__s disease.
Disease/TraitAlzheimer__s disease
Initial sample844 European ancestry cases, 1,255 European ancestry controls
Replication sample1,547 European ancestry cases, 1,209 European ancestry controls
RegionXq21.31
Chromosome idchrX
Chromosome position92147221
Reported genePCDH11X
Mapped genePCDH11X
Upstream gene id
Downstream gene id
SNP gene ids27328
Upstream gene distance
Downstream gene distance
SNP risk allelers2573905-?
SNPsrs2573905
Merged0
SNP id current2573905
Contextintron_variant
Intergenic0
Allele frequency0.46
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.29
%95 Ci[1.17-1.42]
PlatformIllumina [313504]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST000315