SNP Detail For rs2570467
1.Mapping Information
Human SNP ID rs2570467
Human chromosome chr5
Human SNP position 96520975
Pig chromosome chr2
Pig SNP position 106858357
2.Annotation Information
PubMed ID23966867
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23966867
StudyGenome-wide association of body fat distribution in African ancestry populations suggests new loci.
Disease/TraitWaist circumference
Initial sampleUp to 23,564 African American individuals
Replication sampleUp to 10,027 African American individuals
Region5q15
Chromosome idchr5
Chromosome position96520975
Reported genePCSK1
Mapped geneLOC101929710
Upstream gene id
Downstream gene id
SNP gene ids101929710
Upstream gene distance
Downstream gene distance
SNP risk allelers2570467-A
SNPsrs2570467
Merged0
SNP id current2570467
Contextintron_variant
Intergenic0
Allele frequency0.86
P value0.000001
Pvalue mlog6
P value text(men)
Or beta0.1
%95 Ci[0.061-0.139] unit decrease
PlatformAffymetrix, Illumina [3200000] (imputed)
CNVN
Mapped traitwaist circumference
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004342
Study accessionGCST002137