SNP Detail For rs2562519
1.Mapping Information
Human SNP ID rs2562519
Human chromosome chr5
Human SNP position 90485154
Pig chromosome chr2
Pig SNP position 100736068
2.Annotation Information
PubMed ID21810746
JournalClin Infect Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/21810746
StudyGenome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.
Disease/TraitNevirapine-induced rash
Initial sample72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases
Replication sample88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases
Region5q14.3
Chromosome idchr5
Chromosome position90485154
Reported genePOLR3G
Mapped genePOLR3G
Upstream gene id
Downstream gene id
SNP gene ids10622
Upstream gene distance
Downstream gene distance
SNP risk allelers2562519-A
SNPsrs2562519
Merged0
SNP id current2562519
Contextintron_variant
Intergenic0
Allele frequency0.5
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta
%95 Ci
PlatformIllumina [499730]
CNVN
Mapped traitresponse to reverse transcriptase inhibitor
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0061479
Study accessionGCST001186