Human SNP ID | rs2562519 |
---|---|
Human chromosome | chr5 |
Human SNP position | 90485154 |
Pig chromosome | chr2 |
Pig SNP position | 100736068 |
PubMed ID | 21810746 |
---|---|
Journal | Clin Infect Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/21810746 |
Study | Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash. |
Disease/Trait | Nevirapine-induced rash |
Initial sample | 72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases |
Replication sample | 88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases |
Region | 5q14.3 |
Chromosome id | chr5 |
Chromosome position | 90485154 |
Reported gene | POLR3G |
Mapped gene | POLR3G |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10622 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2562519-A |
SNPs | rs2562519 |
Merged | 0 |
SNP id current | 2562519 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [499730] |
CNV | N |
Mapped trait | response to reverse transcriptase inhibitor |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0061479 |
Study accession | GCST001186 |