SNP Detail For rs2554380
1.Mapping Information
Human SNP ID rs2554380
Human chromosome chr15
Human SNP position 83647132
Pig chromosome chr7
Pig SNP position 56860942
2.Annotation Information
PubMed ID18391951
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18391951
StudyMany sequence variants affecting diversity of adult human height.
Disease/TraitHeight
Initial sample30,968 European ancestry individuals
Replication sample8,541 European ancestry individuals
Region15q25.2
Chromosome idchr15
Chromosome position83647132
Reported geneSH3GL3, ADAMTSL3
Mapped geneSH3GL3 - ADAMTSL3
Upstream gene id6457
Downstream gene id57188
SNP gene ids
Upstream gene distance28389
Downstream gene distance6954
SNP risk allelers2554380-T
SNPsrs2554380
Merged0
SNP id current2554380
Contextintergenic_variant
Intergenic1
Allele frequency0.78
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta4.5
%95 Ci[2.74-6.26] % s.d. increase
PlatformAffymetrix, Illumina [up to 304226]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000175