SNP Detail For rs2548621
1.Mapping Information
Human SNP ID rs2548621
Human chromosome chr5
Human SNP position 54606509
Pig chromosome JH118619-1
Pig SNP position 22314
2.Annotation Information
PubMed ID22542470
JournalVaccine
Linkwww.ncbi.nlm.nih.gov/pubmed/22542470
StudyGenome-wide association study of antibody response to smallpox vaccine.
Disease/TraitImmune response to smallpox vaccine (IL-6)
Initial sample217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position54606509
Reported geneSNX18
Mapped geneSNX18 - LOC105378967
Upstream gene id112574
Downstream gene id105378967
SNP gene ids
Upstream gene distance59923
Downstream gene distance11262
SNP risk allelers2548621-?
SNPsrs2548621
Merged0
SNP id current2548621
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.0000009
Pvalue mlog6.04575749056067
P value text(Hispanic)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645
Study accessionGCST001491