Human SNP ID | rs2548621 |
---|---|
Human chromosome | chr5 |
Human SNP position | 54606509 |
Pig chromosome | JH118619-1 |
Pig SNP position | 22314 |
PubMed ID | 22542470 |
---|---|
Journal | Vaccine |
Link | www.ncbi.nlm.nih.gov/pubmed/22542470 |
Study | Genome-wide association study of antibody response to smallpox vaccine. |
Disease/Trait | Immune response to smallpox vaccine (IL-6) |
Initial sample | 217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals |
Replication sample | NA |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 54606509 |
Reported gene | SNX18 |
Mapped gene | SNX18 - LOC105378967 |
Upstream gene id | 112574 |
Downstream gene id | 105378967 |
SNP gene ids | |
Upstream gene distance | 59923 |
Downstream gene distance | 11262 |
SNP risk allele | rs2548621-? |
SNPs | rs2548621 |
Merged | 0 |
SNP id current | 2548621 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (Hispanic) |
Or beta | |
%95 Ci | |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | response to vaccine |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004645 |
Study accession | GCST001491 |