SNP Detail For rs2540226
1.Mapping Information
Human SNP ID rs2540226
Human chromosome chr2
Human SNP position 39731920
Pig chromosome chr3
Pig SNP position 106690302
2.Annotation Information
PubMed ID18957941
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/18957941
StudyGenome-wide association scan for five major dimensions of personality.
Disease/TraitPersonality dimensions
Initial sample3,972 Sardinian individuals
Replication sample3,903 individuals
Region2p22.1
Chromosome idchr2
Chromosome position39731920
Reported geneTHUMPD2
Mapped geneTMEM178A - THUMPD2
Upstream gene id130733
Downstream gene id80745
SNP gene ids
Upstream gene distance13957
Downstream gene distance4140
SNP risk allelers2540226-T
SNPsrs2540226
Merged0
SNP id current2540226
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.53
P value0.000003
Pvalue mlog5.52287874528033
P value text(agreeableness)
Or beta0.13
%95 Ci[NR] s.d. increase
PlatformAffymetrix [362129]
CNVN
Mapped traitpersonality trait
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004365
Study accessionGCST000273