SNP Detail For rs2532871
1.Mapping Information
Human SNP ID rs2532871
Human chromosome chrX
Human SNP position 30555616
Pig chromosome chrX
Pig SNP position 28632004
2.Annotation Information
PubMed ID26502338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26502338
StudyGenetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample5,201 European ancestry cases, 9,066 European ancestry controls
Replication sampleNA
RegionXp21.2
Chromosome idchrX
Chromosome position30555616
Reported geneCXorf21
Mapped geneNR0B1 - CXorf21
Upstream gene id190
Downstream gene id80231
SNP gene ids
Upstream gene distance246238
Downstream gene distance3208
SNP risk allelers2532871-C
SNPsrs2532871
Merged
SNP id current2532871
Contextdownstream_gene_variant
Intergenic1
Allele frequency
P value0.00000007
Pvalue mlog7.15490195998574
P value text
Or beta1.32
%95 Ci[NR]
PlatformIllumina [> 644674] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003156