Human SNP ID | rs2532871 |
---|---|
Human chromosome | chrX |
Human SNP position | 30555616 |
Pig chromosome | chrX |
Pig SNP position | 28632004 |
PubMed ID | 26502338 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26502338 |
Study | Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 5,201 European ancestry cases, 9,066 European ancestry controls |
Replication sample | NA |
Region | Xp21.2 |
Chromosome id | chrX |
Chromosome position | 30555616 |
Reported gene | CXorf21 |
Mapped gene | NR0B1 - CXorf21 |
Upstream gene id | 190 |
Downstream gene id | 80231 |
SNP gene ids | |
Upstream gene distance | 246238 |
Downstream gene distance | 3208 |
SNP risk allele | rs2532871-C |
SNPs | rs2532871 |
Merged | |
SNP id current | 2532871 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.00000007 |
Pvalue mlog | 7.15490195998574 |
P value text | |
Or beta | 1.32 |
%95 Ci | [NR] |
Platform | Illumina [> 644674] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003156 |