Human SNP ID | rs2531995 |
---|---|
Human chromosome | chr16 |
Human SNP position | 3963466 |
Pig chromosome | chr3 |
Pig SNP position | 39474859 |
PubMed ID | 23563607 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563607 |
Study | Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. |
Disease/Trait | Obesity |
Initial sample | 93,015 European ancestry overweight individuals, 32,858 European ancestry class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls |
Replication sample | 65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls |
Region | 16p13.3 |
Chromosome id | chr16 |
Chromosome position | 3963466 |
Reported gene | ADCY9 |
Mapped gene | ADCY9 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 115 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2531995-T |
SNPs | rs2531995 |
Merged | 0 |
SNP id current | 2531995 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.61 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (Obesity I) |
Or beta | 1.07 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2800000] (imputed) |
CNV | N |
Mapped trait | obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST001953 |
PubMed ID | 24861553 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24861553 |
Study | Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index. |
Disease/Trait | Body mass index |
Initial sample | 82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals |
Replication sample | Up to 47,352 East Asian ancestry individuals |
Region | 16p13.3 |
Chromosome id | chr16 |
Chromosome position | 3963466 |
Reported gene | ADCY9 |
Mapped gene | ADCY9 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 115 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2531995-T |
SNPs | rs2531995 |
Merged | 0 |
SNP id current | 2531995 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.33 |
P value | 0.00000007 |
Pvalue mlog | 7.15490195998574 |
P value text | |
Or beta | 0.0315 |
%95 Ci | [0.02-0.043] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002461 |