SNP Detail For rs2524299
1.Mapping Information
Human SNP ID rs2524299
Human chromosome chr11
Human SNP position 61837310
Pig chromosome chr2
Pig SNP position 9128556
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region11q12.2
Chromosome idchr11
Chromosome position61837310
Reported geneNR
Mapped geneFADS2
Upstream gene id
Downstream gene id
SNP gene ids9415
Upstream gene distance
Downstream gene distance
SNP risk allelers2524299-A
SNPsrs2524299
Merged0
SNP id current2524299
Contextintron_variant
Intergenic0
Allele frequency0.8756
P value0.000000007
Pvalue mlog8.15490195998574
P value text(Cis/trans-18:2, EA)
Or beta0.0037
%95 Ci[0.0025-0.0049] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitcis/trans-18:2 fatty acid measurement, trans fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006824, http://www.ebi.ac.uk/efo/EFO_0006821
Study accessionGCST002721