SNP Detail For rs2523989
1.Mapping Information
Human SNP ID rs2523989
Human chromosome chr6
Human SNP position 30110498
Pig chromosome chr7
Pig SNP position 24950047
2.Annotation Information
PubMed ID25936594
JournalJ Autoimmun
Linkwww.ncbi.nlm.nih.gov/pubmed/25936594
StudyGenome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.
Disease/TraitType 1 diabetes and autoimmune thyroid diseases
Initial sample346 European ancestry cases, 727 European ancestry controls
Replication sample185 European ancestry cases, 340 European ancestry controls
Region6p22.1
Chromosome idchr6
Chromosome position30110498
Reported geneTRIM31
Mapped geneTRIM31-AS1, TRIM31
Upstream gene id
Downstream gene id
SNP gene ids104533120, 11074
Upstream gene distance
Downstream gene distance
SNP risk allelers2523989-A
SNPsrs2523989
Merged0
SNP id current2523989
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.7499
%95 Ci
PlatformIllumina [514008]
CNVN
Mapped traitautoimmune thyroid disease, type I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006812, http://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST002876