SNP Detail For rs2523864
1.Mapping Information
Human SNP ID rs2523864
Human chromosome chr6
Human SNP position 31050769
Pig chromosome chr7
Pig SNP position 27355416
2.Annotation Information
PubMed ID25813999
JournalInvest Ophthalmol Vis Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/25813999
StudyIdentification of a Novel Mucin Gene HCG22 Associated with Steroid-Induced Ocular Hypertension.
Disease/TraitChange in intraocular pressure in response to steroid treatment (triamcinolone acetonide)
Initial sample64 European ancestry individuals
Replication sample49 European ancestry individuals
Region6p21.33
Chromosome idchr6
Chromosome position31050769
Reported geneHCG22, HLA-A, HLA-B, MUC22
Mapped geneMUC22 - HCG22
Upstream gene id100507679
Downstream gene id285834
SNP gene ids
Upstream gene distance15199
Downstream gene distance2681
SNP risk allelers2523864-T
SNPsrs2523864
Merged0
SNP id current2523864
Contextupstream_gene_variant
Intergenic1
Allele frequency0.412
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta
%95 Ci
PlatformIllumina [1545328]
CNVN
Mapped traitresponse to triamcinolone acetonide, intraocular pressure change measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006954, http://www.ebi.ac.uk/efo/EFO_0006956
Study accessionGCST002837