Human SNP ID | rs2523864 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31050769 |
Pig chromosome | chr7 |
Pig SNP position | 27355416 |
PubMed ID | 25813999 |
---|---|
Journal | Invest Ophthalmol Vis Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/25813999 |
Study | Identification of a Novel Mucin Gene HCG22 Associated with Steroid-Induced Ocular Hypertension. |
Disease/Trait | Change in intraocular pressure in response to steroid treatment (triamcinolone acetonide) |
Initial sample | 64 European ancestry individuals |
Replication sample | 49 European ancestry individuals |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31050769 |
Reported gene | HCG22, HLA-A, HLA-B, MUC22 |
Mapped gene | MUC22 - HCG22 |
Upstream gene id | 100507679 |
Downstream gene id | 285834 |
SNP gene ids | |
Upstream gene distance | 15199 |
Downstream gene distance | 2681 |
SNP risk allele | rs2523864-T |
SNPs | rs2523864 |
Merged | 0 |
SNP id current | 2523864 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.412 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [1545328] |
CNV | N |
Mapped trait | response to triamcinolone acetonide, intraocular pressure change measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006954, http://www.ebi.ac.uk/efo/EFO_0006956 |
Study accession | GCST002837 |