SNP Detail For rs2523722
1.Mapping Information
Human SNP ID rs2523722
Human chromosome chr6
Human SNP position 30197496
Pig chromosome chr7
Pig SNP position 24809753
2.Annotation Information
PubMed ID22883433
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/22883433
StudyGenome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.
Disease/TraitSchizophrenia
Initial sample1,606 European ancestry cases, 1,794 European ancestry controls
Replication sample13,195 European ancestry cases, 31,021 European ancestry controls
Region6p22.1
Chromosome idchr6
Chromosome position30197496
Reported geneMHC, TRIM26
Mapped geneTRIM26
Upstream gene id
Downstream gene id
SNP gene ids7726
Upstream gene distance
Downstream gene distance
SNP risk allelers2523722-G
SNPsrs2523722
Merged0
SNP id current2523722
Contextintron_variant
Intergenic0
Allele frequency0.737
P value0.0000000000000001
Pvalue mlog16
P value text
Or beta1.25
%95 Ci[1.12-1.39]
PlatformAffymetrix [6212339]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001631