Human SNP ID | rs2523722 |
---|---|
Human chromosome | chr6 |
Human SNP position | 30197496 |
Pig chromosome | chr7 |
Pig SNP position | 24809753 |
PubMed ID | 22883433 |
---|---|
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/22883433 |
Study | Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia. |
Disease/Trait | Schizophrenia |
Initial sample | 1,606 European ancestry cases, 1,794 European ancestry controls |
Replication sample | 13,195 European ancestry cases, 31,021 European ancestry controls |
Region | 6p22.1 |
Chromosome id | chr6 |
Chromosome position | 30197496 |
Reported gene | MHC, TRIM26 |
Mapped gene | TRIM26 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7726 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2523722-G |
SNPs | rs2523722 |
Merged | 0 |
SNP id current | 2523722 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.737 |
P value | 0.0000000000000001 |
Pvalue mlog | 16 |
P value text | |
Or beta | 1.25 |
%95 Ci | [1.12-1.39] |
Platform | Affymetrix [6212339] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001631 |