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SNP Detail For rs2518564
1.Mapping Information
| Human SNP ID | rs2518564 |
|---|---|
| Human chromosome | chr1 |
| Human SNP position | 159092646 |
| Pig chromosome | chr4 |
| Pig SNP position | 99345583 |
2.Annotation Information
| PubMed ID | 25096241 |
|---|---|
| Journal | Hum Mol Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/25096241 |
| Study | Trans-ethnic meta-analysis of white blood cell phenotypes. |
| Disease/Trait | White blood cell count |
| Initial sample | 16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals |
| Replication sample | NA |
| Region | 1q23.1 |
| Chromosome id | chr1 |
| Chromosome position | 159092646 |
| Reported gene | DARC |
| Mapped gene | RAD1P2 - TRR-TCT4-1 |
| Upstream gene id | 100129690 |
| Downstream gene id | 100189166 |
| SNP gene ids | |
| Upstream gene distance | 10953 |
| Downstream gene distance | 48965 |
| SNP risk allele | rs2518564-A |
| SNPs | rs2518564 |
| Merged | 0 |
| SNP id current | 2518564 |
| Context | intron_variant |
| Intergenic | 1 |
| Allele frequency | 0.1725 |
| P value | 1E-149 |
| Pvalue mlog | 149 |
| P value text | (AA) |
| Or beta | 0.1905 |
| %95 Ci | [0.18-0.20] unit increase |
| Platform | Illumina [NR] (imputed) |
| CNV | N |
| Mapped trait | leukocyte count |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004308 |
| Study accession | GCST002556 |
| PubMed ID | 25096241 |
| Journal | Hum Mol Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/25096241 |
| Study | Trans-ethnic meta-analysis of white blood cell phenotypes. |
| Disease/Trait | White blood cell count |
| Initial sample | 16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals |
| Replication sample | NA |
| Region | 1q23.1 |
| Chromosome id | chr1 |
| Chromosome position | 159092646 |
| Reported gene | DARC |
| Mapped gene | RAD1P2 - TRR-TCT4-1 |
| Upstream gene id | 100129690 |
| Downstream gene id | 100189166 |
| SNP gene ids | |
| Upstream gene distance | 10953 |
| Downstream gene distance | 48965 |
| SNP risk allele | rs2518564-? |
| SNPs | rs2518564 |
| Merged | 0 |
| SNP id current | 2518564 |
| Context | intron_variant |
| Intergenic | 1 |
| Allele frequency | NR |
| P value | 7E-69 |
| Pvalue mlog | 68.1549019599857 |
| P value text | |
| Or beta | 0.0365 |
| %95 Ci | [0.032-0.041] unit increase |
| Platform | Illumina [NR] (imputed) |
| CNV | N |
| Mapped trait | leukocyte count |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004308 |
| Study accession | GCST002556 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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