SNP Detail For rs2514895
1.Mapping Information
Human SNP ID rs2514895
Human chromosome chr11
Human SNP position 127240288
Pig chromosome chr9
Pig SNP position 60411573
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region11q24.2
Chromosome idchr11
Chromosome position127240288
Reported geneNR
Mapped geneLOC105369562 - LOC101929497
Upstream gene id105369562
Downstream gene id101929497
SNP gene ids
Upstream gene distance123526
Downstream gene distance30782
SNP risk allelers2514895-C
SNPsrs2514895
Merged0
SNP id current2514895
Contextintergenic_variant
Intergenic1
Allele frequency0.812138921875
P value0.000002
Pvalue mlog5.69897000433601
P value text(IGP36)
Or beta0.1858
%95 Ci[0.11-0.26] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848