Human SNP ID | rs2514895 |
---|---|
Human chromosome | chr11 |
Human SNP position | 127240288 |
Pig chromosome | chr9 |
Pig SNP position | 60411573 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 11q24.2 |
Chromosome id | chr11 |
Chromosome position | 127240288 |
Reported gene | NR |
Mapped gene | LOC105369562 - LOC101929497 |
Upstream gene id | 105369562 |
Downstream gene id | 101929497 |
SNP gene ids | |
Upstream gene distance | 123526 |
Downstream gene distance | 30782 |
SNP risk allele | rs2514895-C |
SNPs | rs2514895 |
Merged | 0 |
SNP id current | 2514895 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.812138921875 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (IGP36) |
Or beta | 0.1858 |
%95 Ci | [0.11-0.26] unit decrease |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |