Human SNP ID | rs251253 |
---|---|
Human chromosome | chr5 |
Human SNP position | 173053333 |
Pig chromosome | chr16 |
Pig SNP position | 55527182 |
PubMed ID | 20062060 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20062060 |
Study | Genome-wide association study of PR interval. |
Disease/Trait | PR interval |
Initial sample | 28,517 European ancestry individuals |
Replication sample | NA |
Region | 5q35.1 |
Chromosome id | chr5 |
Chromosome position | 173053333 |
Reported gene | NKX2-5, C5orf41 |
Mapped gene | ATP6V0E1 - CREBRF |
Upstream gene id | 8992 |
Downstream gene id | 153222 |
SNP gene ids | |
Upstream gene distance | 18436 |
Downstream gene distance | 3016 |
SNP risk allele | rs251253-C |
SNPs | rs251253 |
Merged | 0 |
SNP id current | 251253 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.4 |
P value | 0.0000000000009 |
Pvalue mlog | 12.0457574905606 |
P value text | |
Or beta | 1.49 |
%95 Ci | [1.08-1.90] ms decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | PR interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004462 |
Study accession | GCST000562 |