Human SNP ID | rs2505059 |
---|---|
Human chromosome | chr6 |
Human SNP position | 98048076 |
Pig chromosome | chr1 |
Pig SNP position | 73736248 |
PubMed ID | 23648065 |
---|---|
Journal | Cancer Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23648065 |
Study | Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. |
Disease/Trait | Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs) |
Initial sample | 184 Japanese ancestry cases, 459 Japanese ancestry controls |
Replication sample | NA |
Region | 6q16.1 |
Chromosome id | chr6 |
Chromosome position | 98048076 |
Reported gene | MIR2113 |
Mapped gene | LOC101927335 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101927335 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2505059-G |
SNPs | rs2505059 |
Merged | 0 |
SNP id current | 2505059 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.398 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (Allelic model) |
Or beta | 1.765 |
%95 Ci | [1.383-2.252] |
Platform | Illumina [733202] |
CNV | N |
Mapped trait | response to antineoplastic agent, response to anthracycline-based chemotherapy |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097327, http://www.ebi.ac.uk/efo/EFO_0005257 |
Study accession | GCST002008 |