SNP Detail For rs2505059
1.Mapping Information
Human SNP ID rs2505059
Human chromosome chr6
Human SNP position 98048076
Pig chromosome chr1
Pig SNP position 73736248
2.Annotation Information
PubMed ID23648065
JournalCancer Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/23648065
StudyGenome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
Disease/TraitAdverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)
Initial sample184 Japanese ancestry cases, 459 Japanese ancestry controls
Replication sampleNA
Region6q16.1
Chromosome idchr6
Chromosome position98048076
Reported geneMIR2113
Mapped geneLOC101927335
Upstream gene id
Downstream gene id
SNP gene ids101927335
Upstream gene distance
Downstream gene distance
SNP risk allelers2505059-G
SNPsrs2505059
Merged0
SNP id current2505059
Contextintron_variant
Intergenic0
Allele frequency0.398
P value0.000005
Pvalue mlog5.30102999566398
P value text(Allelic model)
Or beta1.765
%95 Ci[1.383-2.252]
PlatformIllumina [733202]
CNVN
Mapped traitresponse to antineoplastic agent, response to anthracycline-based chemotherapy
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327, http://www.ebi.ac.uk/efo/EFO_0005257
Study accessionGCST002008