SNP Detail For rs2503322
1.Mapping Information
Human SNP ID rs2503322
Human chromosome chr6
Human SNP position 127136115
Pig chromosome chr1
Pig SNP position 39769799
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region6q22.33
Chromosome idchr6
Chromosome position127136115
Reported geneNR
Mapped geneRSPO3, LOC105377988
Upstream gene id
Downstream gene id
SNP gene ids84870, 105377988
Upstream gene distance
Downstream gene distance
SNP risk allelers2503322-A
SNPsrs2503322
Merged
SNP id current2503322
Contextintron_variant
Intergenic0
Allele frequency0.54
P value0.00000006
Pvalue mlog7.22184874961635
P value text(EA)
Or beta1.0676966
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044