Human SNP ID | rs2499604 |
---|---|
Human chromosome | chr1 |
Human SNP position | 237940201 |
Pig chromosome | chr14 |
Pig SNP position | 57459809 |
PubMed ID | 20708005 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/20708005 |
Study | Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease. |
Disease/Trait | Non-alcoholic fatty liver disease histology (AST) |
Initial sample | 236 European ancestry cases |
Replication sample | NA |
Region | 1q43 |
Chromosome id | chr1 |
Chromosome position | 237940201 |
Reported gene | ZP4 |
Mapped gene | LOC100130331 - LOC105373219 |
Upstream gene id | 100130331 |
Downstream gene id | 105373219 |
SNP gene ids | |
Upstream gene distance | 11880 |
Downstream gene distance | 176166 |
SNP risk allele | rs2499604-A |
SNPs | rs2499604 |
Merged | 0 |
SNP id current | 2499604 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.44 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.39 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [324623] |
CNV | N |
Mapped trait | non-alcoholic fatty liver disease, cirrhosis of liver |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422 |
Study accession | GCST000767 |