SNP Detail For rs2499604
1.Mapping Information
Human SNP ID rs2499604
Human chromosome chr1
Human SNP position 237940201
Pig chromosome chr14
Pig SNP position 57459809
2.Annotation Information
PubMed ID20708005
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/20708005
StudyGenome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
Disease/TraitNon-alcoholic fatty liver disease histology (AST)
Initial sample236 European ancestry cases
Replication sampleNA
Region1q43
Chromosome idchr1
Chromosome position237940201
Reported geneZP4
Mapped geneLOC100130331 - LOC105373219
Upstream gene id100130331
Downstream gene id105373219
SNP gene ids
Upstream gene distance11880
Downstream gene distance176166
SNP risk allelers2499604-A
SNPsrs2499604
Merged0
SNP id current2499604
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.44
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.39
%95 Ci[NR] unit decrease
PlatformIllumina [324623]
CNVN
Mapped traitnon-alcoholic fatty liver disease, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST000767