Human SNP ID | rs2494938 |
---|---|
Human chromosome | chr6 |
Human SNP position | 40568389 |
Pig chromosome | chr7 |
Pig SNP position | 41121500 |
PubMed ID | 23103227 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23103227 |
Study | Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese. |
Disease/Trait | Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma) |
Initial sample | 2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls |
Replication sample | 2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls |
Region | 6p21.1 |
Chromosome id | chr6 |
Chromosome position | 40568389 |
Reported gene | LRFN2 |
Mapped gene | LRFN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57497 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2494938-A |
SNPs | rs2494938 |
Merged | 0 |
SNP id current | 2494938 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.23 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Lung Cancer) |
Or beta | 1.15 |
%95 Ci | [1.08-1.22] |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | lung carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001071 |
Study accession | GCST001718 |
PubMed ID | 23103227 |
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23103227 |
Study | Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese. |
Disease/Trait | Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma) |
Initial sample | 2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls |
Replication sample | 2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls |
Region | 6p21.1 |
Chromosome id | chr6 |
Chromosome position | 40568389 |
Reported gene | LRFN2 |
Mapped gene | LRFN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57497 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2494938-A |
SNPs | rs2494938 |
Merged | 0 |
SNP id current | 2494938 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.23 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | (NCGC) |
Or beta | 1.18 |
%95 Ci | [1.12-1.25] |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | squamous cell carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000707 |
Study accession | GCST001718 |
PubMed ID | 23103227 |
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23103227 |
Study | Genetic variants at 6p21.1 and 7p15.3 are associated with risk of multiple cancers in Han Chinese. |
Disease/Trait | Multiple cancers (lung cancer, gastric cancer, and squamous cell carcinoma) |
Initial sample | 2,331 Han Chinese ancestry lung cancer cases, 1,006 Han Chinese ancestry non-cardia gastric cancer cases, 2,031 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 4,006 Han Chinese ancestry controls |
Replication sample | 2,665 Han Chinese ancestry lung cancer cases, 3,330 Han Chinese ancestry non-cardia gastric cancer cases, 3,006 Han Chinese ancestry esophageal squamous-cell carcinoma cases, 11,436 Han Chinese ancestry controls |
Region | 6p21.1 |
Chromosome id | chr6 |
Chromosome position | 40568389 |
Reported gene | LRFN2 |
Mapped gene | LRFN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57497 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2494938-A |
SNPs | rs2494938 |
Merged | 0 |
SNP id current | 2494938 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.23 |
P value | 0.000000000001 |
Pvalue mlog | 12 |
P value text | (All Cancers) |
Or beta | 1.15 |
%95 Ci | [1.10-1.19] |
Platform | Affymetrix [NR] |
CNV | N |
Mapped trait | lung carcinoma, squamous cell carcinoma, gastric carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001071, http://www.ebi.ac.uk/efo/EFO_0000707, http://www.ebi.ac.uk/efo/EFO_0000178 |
Study accession | GCST001718 |