Human SNP ID | rs2488856 |
---|---|
Human chromosome | chr14 |
Human SNP position | 43062199 |
Pig chromosome | chr1 |
Pig SNP position | 192852340 |
PubMed ID | 25080503 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25080503 |
Study | Meta-analysis of genome-wide association studies identifies two loci associated with circulating osteoprotegerin levels. |
Disease/Trait | Osteoprotegerin levels |
Initial sample | 4,158 European ancestry males, 531 South Tyrol males, 4,253 European ancestry females, 692 South Tyrol females, 702 Han Chinese ancestry females |
Replication sample | NA |
Region | 14q21.2 |
Chromosome id | chr14 |
Chromosome position | 43062199 |
Reported gene | intergenic |
Mapped gene | LRFN5 - LOC105370470 |
Upstream gene id | 145581 |
Downstream gene id | 105370470 |
SNP gene ids | |
Upstream gene distance | 1157650 |
Downstream gene distance | 246482 |
SNP risk allele | rs2488856-A |
SNPs | rs2488856 |
Merged | 0 |
SNP id current | 2488856 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.898 |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | (Sex-combined) |
Or beta | 0.044 |
%95 Ci | [0.028-0.060] unit decrease |
Platform | Affymetrix, Illumina [up to 2544063] (imputed) |
CNV | N |
Mapped trait | osteoprotegerin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005918 |
Study accession | GCST002546 |