SNP Detail For rs2487032
1.Mapping Information
Human SNP ID rs2487032
Human chromosome chr9
Human SNP position 104941653
Pig chromosome chr1
Pig SNP position 275875606
2.Annotation Information
PubMed ID25173107
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25173107
StudyCommon variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma.
Disease/TraitGlaucoma (high intraocular pressure)
Initial sample966 Han Chinese ancestry cases, 1,005 Han Chinese ancestry controls
Replication sample1,140 Han Chinese ancestry cases, 2,237 Han Chinese ancestry controls
Region9q31.1
Chromosome idchr9
Chromosome position104941653
Reported geneABCA1
Mapped geneLOC105376196 - LOC105376197
Upstream gene id105376196
Downstream gene id105376197
SNP gene ids
Upstream gene distance2603
Downstream gene distance149862
SNP risk allelers2487032-?
SNPsrs2487032
Merged0
SNP id current2487032
Contextintergenic_variant
Intergenic1
Allele frequency0.52
P value0.00000000000007
Pvalue mlog13.1549019599857
P value text
Or beta1.35
%95 Ci[1.25-1.47]
PlatformIllumina [870261]
CNVN
Mapped traitopen-angle glaucoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004190
Study accessionGCST002581