Human SNP ID | rs2487032 |
---|---|
Human chromosome | chr9 |
Human SNP position | 104941653 |
Pig chromosome | chr1 |
Pig SNP position | 275875606 |
PubMed ID | 25173107 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25173107 |
Study | Common variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma. |
Disease/Trait | Glaucoma (high intraocular pressure) |
Initial sample | 966 Han Chinese ancestry cases, 1,005 Han Chinese ancestry controls |
Replication sample | 1,140 Han Chinese ancestry cases, 2,237 Han Chinese ancestry controls |
Region | 9q31.1 |
Chromosome id | chr9 |
Chromosome position | 104941653 |
Reported gene | ABCA1 |
Mapped gene | LOC105376196 - LOC105376197 |
Upstream gene id | 105376196 |
Downstream gene id | 105376197 |
SNP gene ids | |
Upstream gene distance | 2603 |
Downstream gene distance | 149862 |
SNP risk allele | rs2487032-? |
SNPs | rs2487032 |
Merged | 0 |
SNP id current | 2487032 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.52 |
P value | 0.00000000000007 |
Pvalue mlog | 13.1549019599857 |
P value text | |
Or beta | 1.35 |
%95 Ci | [1.25-1.47] |
Platform | Illumina [870261] |
CNV | N |
Mapped trait | open-angle glaucoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004190 |
Study accession | GCST002581 |